Research
Join a Research Lab
Our students present their own research at national and international scientific conferences including those of the American Chemical Society, the American Society for Biochemistry and Molecular Biology, the American Geophysical Union, the Society for the Advancement of Chicano and Native American Scientists, the Materials Research Society and the Biophysical Society. Students also present their research at local and regional scientific meetings, such as the annual College of Science and Engineering Student Project Showcase.
Students are active in student chapters of the ACS, the ASBMB and SACNAS, and participate in local science education outreach programs such as the ACS Family Science Night and the Bay Area Science Festival.
The department hosts a seminar series with speakers from universities, national labs and industry to talk about current and cutting edge research. We encourage all students to explore faculty research areas and talk to faculty about research opportunities.
Faculty Research Specialization Areas
Evaluation of Martian soil analog materials. Development of new methods for direct monitoring of pollutants via mass spectrometry. Novel analytical techniques for separation and detection of redox-sensitive trace species. Determination of structures and speciation of metals and trace elements adsorbed on environmental surfaces. Modeling speciation, precipitation and adsorption reactions of trace elements in environmental systems. Mechanisms of heavy metal tolerance/accumulation in plants. Effects of heavy metals on gene expression in plants. Detection of trace levels of volatile organic compounds and heavy metals in urban air, water and soil samples. Investigation of the cycling of non-living organic matter in aquatic systems in the context of the oceanic and global carbon cycles.
Professors
- Enright, Michael
- Komada, Tomoko
- Manning, Bruce
- Palmer, Pete
Enzyme reaction mechanisms. Synthesis of enzyme inhibitors, characterization of transition-state analogs and measurement of enzyme-ligand interactions. Isolation and characterization of methyl transferase enzymes. Structure-function relationships in membrane transport proteins and mechanisms of membrane biogenesis, with emphasis on outer membrane proteins of Escherichia coli. Biosynthesis and regulation of the expression of complex carbohydrate cell surface antigens. Characterization of enzymes involved in the nitric oxide cellular signaling pathway. Structural and functional studies of metalloproteins involved in redox reactions, oxygen activation, oxygen transport and signal transduction.
Professors
Materials and Computational Chemistry. Research in this area (Adelstein) seeks to understand and improve materials for electrochemical technologies, with a focus on Li-ion batteries. We study atomic-scale processes, such as diffusion, in battery materials, using first-principles (quantum mechanics) simulations. Computational and Structural Biochemistry. Molecular dynamics simulations are used to study conformational dynamics of macromolecular structures including proteins, protein/DNA compexes, and DNA repair machinery. Topics of research will include computational studies of carcinogen modified bases and understanding the role of structural features in human DNA repair and recognition (Guliaev).
Professors
Reaction mechanisms and synthetic applications of organic peroxides. Mechanisms of fundamental organic reactions: computational approaches to modeling the transition states of nucleophilic substitutions and elimination reactions. Conformations of small peptides. Structure-reactivity relationships in acid- and base-catalyzed organic reactions, including heterolytic cleavage of C-H and C-C bonds. Design and synthesis of substrate analogs to elucidate the catalytic mechanisms of enzymes. Design and synthesis of novel modulators for enzymes and ion channels to treat human disease.
Professors
- Amagata, Taro
- Anderson, Marc
- Koehn, Eric
- Wu, Weiming
Research focuses on areas related to renewable energy and environmental remediation. Electrochemistry methods are used to examine charge transfer at the interface of electrodes and molecules in (photo) electrocatalytic anode reactions (Qiu); structural characterization methods include scanning electron and atomic force microscopy (SEM and AFM). Transition metal oxide and chalcogenide thin films are synthesized and characterized (SEM, AFM, XRD, conductivity, etc.) to prepare robust charge transport layers, photocatalysts for environmental remediation, and photoelectrocatalysts for water splitting (Ichimura). Lithium ion battery materials are studied using density functional theory (DFT) to inform the design and efficacy of solid state electrolytes (Adelstein).
Professors
Resources for Research
College of Science and Engineering Hosted Facilities
- Electron microscopy facility
- Cell and Molecular Imaging Center (CMIC)
- Atomic Force Microscopy (AFM) (contact Dr. Andrew Ichimura)
NMR Spectrometer (TH-111)
- Bruker 500 MHz NMR Spectrometer with Prodigy Cryoprobe (2017)
Agilent Technologies Teaching Laboratory (SEIC-201)
- Cary 60 UV-Vis spectrometers (2)
- Cary 3500 UV-Vis spectrometer with Peltier
- Cary 5000 UV-Vis-NIR spectrometer
- Cary Eclipse Fluorescence spectrometer
- Cary 630 KBr FTIR spectrometer
- Thermo Nicolet 4700 FTIR spectrometer
- Anton Paar CORA 5100 Raman spectrometer
- Agilent 6546 LC/Q-TOF LC-MS system
- Agilent 7000E QQQ GC-MS w/7697A headspace sampler
- Agilent 8890 GC-TCD-FID w/7697A headspace sampler
- Agilent 8890 GC-TCD-FID
- Agilent 4200 MP-AES spectrometer
- Bruker D6 Phaser XRD
- Bruker S2 Puma XRF
- Mettler-Toledo TGA/DSC 3+
- PicoQuant FluoTime 300 time-resolved photoluminescence spectrometer
Agilent BioTek Equipment (SCI 207)
- BioTek Synergy Neo2 Hybrid Multimode Reader (2)
- BioTek Epoch 2 Microplate Spectrophotometer (2)
McKinney Computer Lab (SEIC-115)
- The McKinney Computer Lab is an essential instructional facility within the Department of Chemistry and Biochemistry, supporting a wide range of courses and serving a large student body utilizing computational tools. The laboratory is equipped with 24 high-performance Windows workstations. It provides access to a variety of computational and scientific software packages, including Spartan 24, Gaussian 16 with GaussView 6, VMD, ChemDraw, Mathematica, MATLAB, Microsoft Office, and many others.
- The Lab is primarily used for instructional purposes but is also available to Chemistry and Biochemistry faculty and students engaged in research. For more information, please contact contact Prof. Anton Guliaev
- In addition, departmental faculty and students have access to computational resources centrally managed by Academic Technology — including the Platform for Open Learning, Academic Research, & Innovative Scientific Computing (POLARIS) high-performance cluster and virtual machines (VMs). Learn more from Academic Technology.
NMR Spectrometer (TH-111)
- Bruker 500 MHz NMR Spectrometer with Prodigy Cryoprobe (2017)
Molecular Visualization Software
Eric Martz's site for Chime, Protein Explorer and RasMol software for looking at macromolecular structure and its relation to function
NIST Chemistry Webbook
This site provides thermochemical, thermophysical, and ion energetics data compiled by the National Institute of Standards and Technology (NIST) under the Standard Reference Data Program.
SDBS: Spectroscopic Database for Organic Compounds
This site, located in Japan, provides a variety of useful spectrosopic data (NMR, IR, MS, UV-Vis, etc.) for a large number of known compounds, free of charge.
NMRDB: A freely available web-based resource for NMR prediction
This site can be used to predict 1H NMR for compounds. drawn via the web-based interface. Start by pressing the "NMR Predictor" link, then press "draw molecule" to open a Java-based molecular drawing program. When the molecule is drawn corrrectly, press the "submit" button.
Protein Data Bank
The Protein Data Bank (PDB), operated by the Research Collaboratory for Structural Bioinformatics (RCSB), is the single international repository for the processing and distribution of 3D macromolecular structure data primarily determined experimentally by X-ray crystallography and NMR.
Proteopedia: Life in 3D
The proteopedia project, hosted in Israel, is a collaborative 3D encyclopedia of proteins and macromolecules, that visually demonstrates the structure and function of these species using literature X-ray crystallographic data.
BenchFly
A website dedicated to documenting and sharing scientific protocols by videotaped media.
ACS Division of Organic Chemistry Resources
A nice collection of organic chemistry resources.